Detailed information of matrix profile MA0237.2

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Profile summary
Name: pan
Matrix ID: MA0237.2
Class: High-mobility group (HMG) domain factors
Family:
Collection: CORE
Taxon: Insects
Species: Drosophila melanogaster
Data Type: ChIP-chip
Validation: 9118222
Uniprot ID: Q8IMA8  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 0 0 0 0 7 11 7 0 0 0 0 11 34 22 ]
C [ 0 71 0 20 43 10 40 30 0 0 0 9 0 0 ]
G [ 34 0 71 40 3 19 0 15 0 0 11 41 21 0 ]
T [ 37 0 0 11 18 31 24 26 71 71 60 10 16 49 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0237.1 MA0237 1 pan Drosophila melanogaster
High Mobility Group box (HMG) High-mobility group (HMG) domain factors
MA0237.2 MA0237 2 pan Drosophila melanogaster
High-mobility group (HMG) domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0549.1

ChIP-seq Centrality
log(P-value): -217.969

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0549.1

ChIP-seq Centrality
log(P-value): -97.4282

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: