Detailed information of matrix profile MA0537.1

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Profile summary
Name: blmp-1
Matrix ID: MA0537.1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc finger factors
Collection: CORE
Taxon: Nematodes
Species: Caenorhabditis elegans
Data Type: ChIP-seq
Validation: 20421211
Uniprot ID: Q93560  
Source:
Comment: C. elegans blmp-1 is the homologue of mammalian Blimp1 (B Lymphocyte-Induced Maturation Protein-1, official name: PRDM1).

Sequence logo

Frequency matrix

         
A [ 112 33 153 0 0 1328 466 0 0 10 0 ]
C [ 1383 254 1086 0 3368 548 2060 152 442 266 1459 ]
G [ 128 0 0 0 0 335 0 0 0 0 0 ]
T [ 1745 3081 2129 3368 0 1157 842 3216 2926 3092 1909 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0537.1 MA0537 1 blmp-1 Caenorhabditis elegans
More than 3 adjacent zinc finger factors C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0451.1

ChIP-seq Centrality
log(P-value): -217.856

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0451.1

ChIP-seq Centrality
log(P-value): -175.41

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: