Detailed information of matrix profile MA1159.1

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Profile summary
Name: SGR5
Matrix ID: MA1159.1
Class: C2H2 zinc finger factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: F4IPE3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 189 117 19 1 0 0 3 1 42 0 247 123 96 40 141 ]
C [ 43 21 11 0 7 1 0 566 22 92 27 44 116 160 40 ]
G [ 83 34 10 1 1 599 6 0 4 22 16 0 48 57 126 ]
T [ 285 428 560 598 592 0 591 33 532 486 310 433 340 343 293 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1159.1 MA1159 1 SGR5 Arabidopsis thaliana
C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0385.1

ChIP-seq Centrality
log(P-value): -5342.97

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0385.1

ChIP-seq Centrality
log(P-value): -5327.28

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: