Detailed information of matrix profile MA1187.1

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Profile summary
Name: LCL1
Matrix ID: MA1187.1
Class: Helix-Turn-Helix
Family: Myb-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q6R0G4  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 273 447 545 560 556 12 560 0 3 11 ]
C [ 93 10 0 0 4 0 0 0 558 24 ]
G [ 100 25 0 1 1 1 1 0 0 0 ]
T [ 95 79 16 0 0 548 0 561 0 526 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1187.1 MA1187 1 LCL1 Arabidopsis thaliana
Myb-related Helix-Turn-Helix
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0354.1

ChIP-seq Centrality
log(P-value): -10590.1

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0354.1

ChIP-seq Centrality
log(P-value): -11198.0

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: