Detailed information of matrix profile MA1195.1

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Profile summary
Name: AT5G56840
Matrix ID: MA1195.1
Class: Helix-Turn-Helix
Family: Myb-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID:
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 168 253 253 260 115 113 0 597 3 561 563 69 192 131 163 ]
C [ 88 25 10 30 47 0 0 1 0 7 2 59 37 72 57 ]
G [ 147 68 4 86 6 481 600 2 3 19 24 358 324 20 45 ]
T [ 197 254 333 224 432 6 0 0 594 13 11 114 47 377 335 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1195.1 MA1195 1 AT5G56840 Arabidopsis thaliana
Myb-related Helix-Turn-Helix
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0280.1

ChIP-seq Centrality
log(P-value): -17968.7

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0280.1

ChIP-seq Centrality
log(P-value): -17780.7

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: