Detailed information of matrix profile MA1222.1

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Profile summary
Name: AT1G44830
Matrix ID: MA1222.1
Class: AP2/ERF domain
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 15319480
Uniprot ID: Q9LPE8  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 105 4 115 0 0 0 11 2 87 221 79 109 164 80 140 ]
C [ 137 0 9 568 0 0 73 0 39 206 33 49 139 40 52 ]
G [ 2 591 307 0 595 595 0 592 446 25 405 361 57 395 342 ]
T [ 351 0 164 27 0 0 511 1 23 143 78 76 235 80 61 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1222.1 MA1222 1 AT1G44830 Arabidopsis thaliana
AP2/ERF domain
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0235.1

ChIP-seq Centrality
log(P-value): -1339.14

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0235.1

ChIP-seq Centrality
log(P-value): -1598.43

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: