Detailed information of matrix profile MA1224.1

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Profile summary
Name: CBF1
Matrix ID: MA1224.1
Class: AP2/ERF domain
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 9952441
Uniprot ID: P93835  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 107 344 62 0 4 0 0 4 2 155 261 211 ]
C [ 113 28 115 0 0 600 0 0 337 86 68 177 ]
G [ 204 100 38 600 0 0 600 596 0 288 192 64 ]
T [ 176 128 385 0 596 0 0 0 261 71 79 148 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1224.1 MA1224 1 CBF1 Arabidopsis thaliana
AP2/ERF domain
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0313.1

ChIP-seq Centrality
log(P-value): -13054.9

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0313.1

ChIP-seq Centrality
log(P-value): -12829.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: