Detailed information of matrix profile MA1278.1

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Profile summary
Name: OBP1
Matrix ID: MA1278.1
Class: C2H2 zinc finger factors
Family: Dof-type
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 10758479
Uniprot ID: Q39088  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 332 426 600 593 586 0 93 303 367 381 350 316 313 289 315 350 325 238 257 229 239 ]
C [ 104 0 0 0 0 0 157 43 17 69 70 51 62 74 34 62 42 57 82 104 80 ]
G [ 105 29 0 7 14 600 146 93 169 83 67 142 119 135 164 107 153 194 169 137 136 ]
T [ 59 145 0 0 0 0 204 161 47 67 113 91 106 102 87 81 80 111 92 130 145 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1278.1 MA1278 1 OBP1 Arabidopsis thaliana
Dof-type C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0374.1

ChIP-seq Centrality
log(P-value): -5320.55

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0374.1

ChIP-seq Centrality
log(P-value): -5000.74

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: