Detailed information of matrix profile MA1280.1

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Profile summary
Name: OBP4
Matrix ID: MA1280.1
Class: C2H2 zinc finger factors
Family: Dof-type
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 10758479
Uniprot ID: Q8LDR0  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 185 166 178 115 50 257 332 0 0 0 1 141 20 90 ]
C [ 55 76 52 80 131 127 209 600 0 0 0 3 34 174 ]
G [ 87 96 77 102 32 23 37 0 0 0 0 0 17 194 ]
T [ 273 262 293 303 387 193 22 0 600 600 599 456 529 142 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1280.1 MA1280 1 OBP4 Arabidopsis thaliana
Dof-type C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0376.1

ChIP-seq Centrality
log(P-value): -15462.1

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0376.1

ChIP-seq Centrality
log(P-value): -14742.3

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: