Detailed information of matrix profile MA1282.1

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Profile summary
Name: PTF1
Matrix ID: MA1282.1
Class: Basic helix-loop-helix factors (bHLH)
Family: TCP domain
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 12000681
Uniprot ID: Q9S7W5  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 43 45 7 0 0 1 10 0 0 1 13 106 8 ]
C [ 27 12 6 10 0 0 0 130 130 129 97 7 96 ]
G [ 10 16 117 0 130 129 21 0 0 0 9 11 9 ]
T [ 50 57 0 120 0 0 99 0 0 0 11 6 17 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1282.1 MA1282 1 PTF1 Arabidopsis thaliana
TCP domain Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

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GC Content: