Detailed information of matrix profile MA1285.1

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Profile summary
Name: At2g45680
Matrix ID: MA1285.1
Class: Basic helix-loop-helix factors (bHLH)
Family: TCP domain
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 21241251
Uniprot ID: O64647  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 77 36 0 22 0 7 222 1 0 0 374 4 106 103 87 192 212 192 70 48 66 ]
C [ 36 11 38 1 0 0 23 370 394 379 1 332 34 30 151 42 78 49 51 57 60 ]
G [ 178 346 1 371 393 388 97 0 0 0 19 13 166 170 92 58 55 89 79 205 192 ]
T [ 104 2 356 1 2 0 53 24 1 16 1 46 89 92 65 103 50 65 195 85 77 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1285.1 MA1285 1 At2g45680 Arabidopsis thaliana
TCP domain Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0255.1

ChIP-seq Centrality
log(P-value): -1088.89

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0255.1

ChIP-seq Centrality
log(P-value): -1109.07

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: