Detailed information of matrix profile MA1396.1

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Profile summary
Name: GATA6
Matrix ID: MA1396.1
Class: Other C4 zinc finger-type factors
Family: GATA-type zinc fingers
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q9SD38  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 157 111 236 39 23 0 342 0 417 0 0 4 176 ]
C [ 44 53 40 30 244 72 6 0 0 0 417 22 37 ]
G [ 117 162 47 50 57 0 69 417 0 0 0 0 159 ]
T [ 99 91 94 298 93 345 0 0 0 417 0 391 45 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1396.1 MA1396 1 GATA6 Arabidopsis thaliana
GATA-type zinc fingers Other C4 zinc finger-type factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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GC Content: