Detailed information of matrix profile MA1398.1

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Profile summary
Name: KUA1
Matrix ID: MA1398.1
Class: Helix-Turn-Helix
Family: Myb-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q9LVS0  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 269 231 80 72 0 599 0 567 544 106 190 172 186 220 203 ]
C [ 9 28 74 0 0 0 0 15 0 57 48 92 63 67 52 ]
G [ 16 126 4 527 599 0 0 6 44 300 285 45 73 122 119 ]
T [ 305 214 441 0 0 0 599 11 11 136 76 290 277 190 225 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1398.1 MA1398 1 KUA1 Arabidopsis thaliana
Myb-related Helix-Turn-Helix
MA1398.2 MA1398 2 KUA1 Arabidopsis thaliana
Myb-related Helix-Turn-Helix
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0278.1

ChIP-seq Centrality
log(P-value): -28860.5

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0278.1

ChIP-seq Centrality
log(P-value): -28379.0

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: