Detailed information of matrix profile MA1428.1

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Profile summary
Name: TCP8
Matrix ID: MA1428.1
Class: Basic helix-loop-helix factors (bHLH)
Family: TCP domain
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: PBM
Validation: 25702611
Uniprot ID: Q9C518  
Source: 31133749
Comment: TCP family transcription factors (TFs) characteristically bind to consensus sequences, with class I members binding to GGNCCCAC and class II members binding to GGGNCCAC (Kosugi and Ohashi, 2002).

Sequence logo

Frequency matrix

         
A [ 172 41 143 150 160 32 20 864 32 ]
C [ 240 15 29 255 652 963 902 1 725 ]
G [ 373 801 725 433 63 2 0 113 97 ]
T [ 213 140 101 161 122 0 76 20 145 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1428.1 MA1428 1 TCP8 Arabidopsis thaliana
TCP domain Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

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GC Content: