Detailed information of matrix profile MA1531.1

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Profile summary
Name: NR1D1
Matrix ID: MA1531.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 14559106
Uniprot ID: P20393  
Source: 28473536
Comment: ONLY IF first 5 bp are removed!!!

Sequence logo

Frequency matrix

         
A [ 1580 20 344 6595 6 1113 11 6595 301 7 4243 6595 12 723 43 ]
C [ 1809 917 89 700 6595 6595 3018 213 4428 2 2 1647 6595 6595 3362 ]
G [ 1532 4 6595 429 0 0 92 117 1241 2 6595 206 0 2 358 ]
T [ 1674 6595 1 213 8 0 3576 20 625 6595 0 0 51 16 3233 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1531.1 MA1531 1 NR1D1 Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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