Detailed information of matrix profile MA1532.1

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Profile summary
Name: NR1D2
Matrix ID: MA1532.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 14559106
Uniprot ID: Q14995  
Source: 28473536
Comment: ONLY IF first 5 bp are removed!!!

Sequence logo

Frequency matrix

         
A [ 530 94 662 1655 17 797 40 1655 255 91 2518 1655 56 557 62 ]
C [ 457 554 134 268 1655 1655 890 191 865 29 23 470 1655 1655 917 ]
G [ 278 18 1655 125 4 0 34 128 299 0 1655 92 4 1 121 ]
T [ 390 1655 32 136 40 14 765 69 236 1655 61 5 43 36 738 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1532.1 MA1532 1 NR1D2 Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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