Detailed information of matrix profile MA1556.1

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Profile summary
Name: RXRG(var.2)
Matrix ID: MA1556.1
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 14559106
Uniprot ID: P48443  
Source: 28473536
Comment: additional binding mode

Sequence logo

Frequency matrix

         
A [ 761 1235 37 64 119 26 1279 0 16 2117 99 0 0 79 ]
C [ 226 57 176 63 78 2117 0 0 1 33 2117 2117 853 1071 ]
G [ 996 882 2117 2117 214 55 838 15 2117 5 31 107 7 164 ]
T [ 135 23 144 144 2117 64 0 2117 0 12 7 0 1264 803 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1556.1 MA1556 1 RXRG(var.2) Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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