Detailed information of matrix profile MA1568.1

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Profile summary
Name: TCF21(var.2)
Matrix ID: MA1568.1
Class: Basic helix-loop-helix factors (bHLH)
Family: Tal-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 25215497
Uniprot ID: O43680  
Source: 28473536
Comment: additional binding mode

Sequence logo

Frequency matrix

         
A [ 105 431 339 18 872 0 872 14 2 28 194 186 ]
C [ 315 6 533 872 0 71 67 164 12 205 352 175 ]
G [ 150 441 86 0 107 43 54 0 872 872 20 398 ]
T [ 301 87 19 4 21 872 0 872 4 89 872 113 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1568.1 MA1568 1 TCF21(var.2) Homo sapiens
Tal-related factors Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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