Detailed information of matrix profile MA1602.1

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Profile summary
Name: ZSCAN29
Matrix ID: MA1602.1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc finger factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 28473536
Uniprot ID: Q8IWY8  
Source: 27852650
Comment: HT-SELEX

Sequence logo

Frequency matrix

         
A [ 179 44 175 12 0 155 4 949 0 977 0 310 ]
C [ 326 786 310 24 350 0 0 0 0 4 977 124 ]
G [ 294 40 207 961 0 838 4 48 993 16 0 497 ]
T [ 199 127 306 0 647 4 989 0 4 0 20 68 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1602.1 MA1602 1 ZSCAN29 Homo sapiens
More than 3 adjacent zinc finger factors C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0648.1

ChIP-seq Centrality
log(P-value): -269.502

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0648.1

ChIP-seq Centrality
log(P-value): -259.498

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: