Detailed information of matrix profile MA1667.1

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Profile summary
Name: HSFC1
Matrix ID: MA1667.1
Class: Heat shock factors
Family: HSF factors
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 8689565
Uniprot ID: Q9LV52  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 0 0 516 0 588 538 123 70 36 6 0 ]
C [ 599 102 19 3 2 1 98 363 1 0 600 ]
G [ 0 15 65 597 0 18 241 127 0 0 0 ]
T [ 1 483 0 0 10 43 138 40 563 594 0 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1667.1 MA1667 1 HSFC1 Arabidopsis thaliana
HSF factors Heat shock factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0674.1

ChIP-seq Centrality
log(P-value): -3659.65

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0674.1

ChIP-seq Centrality
log(P-value): -3852.61

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: