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2020
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Detailed information of matrix profile
MA1691.1
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Matrix > MA1691.1
Profile summary
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Name:
ARF27
Matrix ID:
MA1691.1
Class:
B3 domain
Family:
Collection:
CORE
Taxon:
Plants
Species:
Zea mays
Data Type:
DAP-seq
Validation:
24485461
Uniprot ID:
D9HNV4
Source:
30375394
Comment:
The motif matches the TGTC core motif associated to ARF TFs.
Sequence logo
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Frequency matrix
JASPAR
TRANSFAC
MEME
RAW PFM
Reverse comp.
A [
1594
1332
4985
47
110
40
162
148
244
497
1429
1531
1251
]
C [
1667
2355
596
55
89
160
6412
115
279
4962
1857
1322
1789
]
G [
1600
1498
467
76
6539
133
93
635
6134
671
860
2049
2266
]
T [
1969
1645
782
6652
92
6497
163
5932
173
700
2684
1928
1524
]
Binding sites information
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FASTA file
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Version information
ChIP-seq centrality
First order TFFM
Detailed TFFM
Wordclouds
More details
Matrix ID
Base ID
Version
Name
Species
Family
Class
Sequence logo
MA1691.1
MA1691
1
ARF27
Zea mays
B3 domain
JASPAR
TRANSFAC
MEME
RAW PFM
log(P-value) = -6396.08
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Description:
Alias:
Symbol:
Consensus:
Included Models:
GC Content: