Detailed information of matrix profile PH0129.1

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Profile summary
Name: Otx1
Matrix ID: PH0129.1
Class: Helix-Turn-Helix
Family: Homeo
Collection: PBM_HOMEO
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: P80205  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 31 30 32 49 66 14 6 98 99 0 1 0 2 5 36 22 25 ]
C [ 24 16 20 9 10 14 0 0 0 0 99 92 61 47 16 49 30 ]
G [ 26 22 24 13 13 3 0 0 0 4 0 0 20 5 11 10 15 ]
T [ 19 32 24 29 12 69 94 1 0 95 1 8 18 43 37 19 30 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PH0129.1 PH0129 1 Otx1 Mus musculus
Homeo Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

Included Models:

GC Content: