Detailed information of matrix profile UN0365.1

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Profile summary

Name: GT-2
Matrix ID: UN0365.1
Class: Helix-Turn-Helix
Family: Trihelix
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: Q39117  
Source: 27203113
Comment: not supported by literature

Sequence logo

Frequency matrix

         
A [ 1279 1341 436 398 156 48 349 3753 15 45 1214 905 ]
C [ 680 543 209 47 96 49 202 19 3664 3652 587 784 ]
G [ 437 467 173 52 63 25 67 24 18 22 854 404 ]
T [ 1449 1494 3027 3348 3530 3723 3227 49 148 126 1190 1752 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0365.1 UN0365 1 GT-2 Arabidopsis thaliana
Trihelix Helix-Turn-Helix
     

log(P-value) = -2029.93

TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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