JASPAR Collection CNE

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Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0101.1 LM101 ATTTGCATACATTTGCAT Homo sapiens
CN0102.1 LM102 TCAAAGYACTTTWCAARM Homo sapiens
CN0103.1 LM103 AAATGTCACCATCTGKW Homo sapiens
CN0104.1 LM104 TTGACCTTTAAAGCW Homo sapiens
CN0105.1 LM105 CTCCCATTGACTTCAATGG Homo sapiens
CN0106.1 LM106 TGCTGASTCAGCA Homo sapiens
CN0107.1 LM107 WKMAATTAGCCATCTG Homo sapiens
CN0108.1 LM108 YSAATTATCCAGATAATTGCY Homo sapiens
CN0109.1 LM109 WKCTGTSAWTCAMAR Homo sapiens
CN0110.1 LM110 ATTTCCTGGGGATTAATGACY Homo sapiens
Showing 10 profiles of page 11 from 24 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.