JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1691.1 ARF27 Zea mays B3 domain
MA1692.1 ARF29 Zea mays B3 domain
MA1693.1 ARF34 Zea mays B3 domain
MA1694.1 ARF35 Zea mays B3 domain
MA1695.1 ARF36 Zea mays B3 domain
MA1696.1 ARF39 Zea mays B3 domain
MA1697.1 ARF4 Zea mays B3 domain
MA1698.1 ARF7 Zea mays B3 domain
MA1699.1 ceh-38 Caenorhabditis elegans Homeo domain factors
MA1700.1 Clamp Drosophila melanogaster C2H2 zinc finger factors
Showing 10 profiles of page 196 from 197 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.