JASPAR CORE

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Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0172.1 CG11294 Drosophila melanogaster Homeo domain factors
MA0173.1 CG11617 Drosophila melanogaster Homeo domain factors
MA0174.1 Dbx Drosophila melanogaster Homeo domain factors
MA0175.1 lms Drosophila melanogaster Homeo domain factors
MA0176.1 CG15696-RA Drosophila melanogaster Homeo domain factors
MA0177.1 CG18599 Drosophila melanogaster Homeo domain factors
MA0178.1 CG32105 Drosophila melanogaster Homeo domain factors
MA0179.1 CG32532 Drosophila melanogaster Homeo domain factors
MA0180.1 Vsx2 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0181.1 Vsx1 Drosophila melanogaster Homeo domain factors Paired-related HD factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.