JASPAR Collection PBM_HOMEO

  1. Home
  2. Collection pbm_homeo

Total 176 profiles

Display profiles
ID Name Species Class Family Sequence logo
PH0051.1 Hoxa4 Mus musculus Helix-Turn-Helix Homeo
PH0052.1 Hoxa5 Mus musculus Helix-Turn-Helix Homeo
PH0053.1 Hoxa6 Mus musculus Helix-Turn-Helix Homeo
PH0054.1 Hoxa7_1 Mus musculus Helix-Turn-Helix Homeo
PH0055.1 Hoxa7_2 Mus musculus Helix-Turn-Helix Homeo
PH0056.1 Hoxa9 Mus musculus Helix-Turn-Helix Homeo
PH0057.1 Hoxb13 Mus musculus Helix-Turn-Helix Homeo
PH0058.1 Hoxb3 Mus musculus Helix-Turn-Helix Homeo
PH0059.1 Hoxb4 Mus musculus Helix-Turn-Helix Homeo
PH0060.1 Hoxb5 Mus musculus Helix-Turn-Helix Homeo
PH0061.1 Hoxb6 Mus musculus Helix-Turn-Helix Homeo
PH0062.1 Hoxb7 Mus musculus Helix-Turn-Helix Homeo
PH0063.1 Hoxb8 Mus musculus Helix-Turn-Helix Homeo
PH0064.1 Hoxb9 Mus musculus Helix-Turn-Helix Homeo
PH0065.1 Hoxc10 Mus musculus Helix-Turn-Helix Homeo
PH0066.1 Hoxc11 Mus musculus Helix-Turn-Helix Homeo
PH0067.1 Hoxc12 Mus musculus Helix-Turn-Helix Homeo
PH0068.1 Hoxc13 Mus musculus Helix-Turn-Helix Homeo
PH0069.1 Hoxc4 Mus musculus Helix-Turn-Helix Homeo
PH0070.1 Hoxc5 Mus musculus Helix-Turn-Helix Homeo
PH0071.1 Hoxc6 Mus musculus Helix-Turn-Helix Homeo
PH0072.1 Hoxc8 Mus musculus Helix-Turn-Helix Homeo
PH0073.1 Hoxc9 Mus musculus Helix-Turn-Helix Homeo
PH0074.1 Hoxd1 Mus musculus Helix-Turn-Helix Homeo
PH0075.1 Hoxd10 Mus musculus Helix-Turn-Helix Homeo
Showing 25 profiles of page 3 from 8 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.