Detailed information of matrix profile MA0008.1

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Profile summary
Name: HAT5
Matrix ID: MA0008.1
Class: Homeo domain factors
Family: Homeo
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: SELEX
Validation: 8253077
Uniprot ID: Q02283  
Source:
Comment: homodimer

Sequence logo

Frequency matrix

         
A [ 3 21 25 0 0 24 1 0 ]
C [ 13 1 0 0 5 0 0 0 ]
G [ 4 0 0 0 0 1 0 2 ]
T [ 5 3 0 25 20 0 24 23 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0008.1 MA0008 1 HAT5 Arabidopsis thaliana
Homeo Homeo domain factors
MA0008.2 MA0008 2 HAT5 Arabidopsis thaliana
Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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