Detailed information of matrix profile MA0038.2

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Profile summary
Name: GFI1
Matrix ID: MA0038.2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc finger factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 8754800
Uniprot ID: Q99684  
Source: 28473536
Comment: ONLY IF the profile is SPLIT from BP 14!!!

Sequence logo

Frequency matrix

         
A [ 3668 19146 30168 30150 0 15 29255 838 7748 2294 292 16713 ]
C [ 11575 10155 2 0 0 30139 0 27769 54 266 27891 5221 ]
G [ 7376 812 0 0 0 0 0 3888 8349 27514 0 4079 ]
T [ 7527 565 0 1 30161 10 1594 0 13996 888 3702 4134 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0038.1 MA0038 1 Gfi1 Rattus norvegicus
More than 3 adjacent zinc finger factors C2H2 zinc finger factors
MA0038.2 MA0038 2 GFI1 Homo sapiens
More than 3 adjacent zinc finger factors C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0491.1

ChIP-seq Centrality
log(P-value): -1410.08

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0491.1

ChIP-seq Centrality
log(P-value): -1429.84

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: