Detailed information of matrix profile MA0110.3

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Profile summary
Name: ATHB-5
Matrix ID: MA0110.3
Class: Homeo domain factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 11247607
Uniprot ID: P46667  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 3639 2718 1051 9632 9563 230 841 9809 648 633 3099 3606 ]
C [ 1914 2228 7517 197 154 98 8049 48 178 312 1661 1561 ]
G [ 1346 1336 386 74 50 59 254 51 175 394 2309 1609 ]
T [ 3223 3840 1168 219 355 9735 978 214 9121 8783 3053 3346 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0110.1 MA0110 1 ATHB-5 Arabidopsis thaliana
Homeo Homeo domain factors
MA0110.2 MA0110 2 ATHB-5 Arabidopsis thaliana
Homeo domain factors
MA0110.3 MA0110 3 ATHB-5 Arabidopsis thaliana
Homeo domain factors
     

log(P-value) = -1576.59

TFFM details

TFFM ID: TFFM0294.2

ChIP-seq Centrality
log(P-value): -2430.84

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0294.2

ChIP-seq Centrality
log(P-value): -2273.55

TFFM detailed summary logos

Description:

Alias:

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Consensus:

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GC Content: