Detailed information of matrix profile MA0512.2

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Profile summary
Name: Rxra
Matrix ID: MA0512.2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 1323763
Uniprot ID: P28700  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 12568 21345 110 132 47 97 46204 45275 45265 39 63 44 63 44403 ]
C [ 5031 200 77 72 109 44342 51 89 73 71 85 114 43686 158 ]
G [ 30811 30406 38290 36414 372 577 120 830 1369 39798 38185 267 348 2447 ]
T [ 2084 75 159 4372 40596 2686 21 368 19 51 3335 39867 1775 37 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0512.1 MA0512 1 Rxra Mus musculus
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
MA0512.2 MA0512 2 Rxra Mus musculus
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0094.1

ChIP-seq Centrality
log(P-value): -2658.03

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0094.1

ChIP-seq Centrality
log(P-value): -2574.75

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: