Detailed information of matrix profile MA0570.2

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Profile summary
Name: ABF1
Matrix ID: MA0570.2
Class: Basic leucine zipper factors (bZIP)
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-seq
Validation: 10636868
Uniprot ID: Q9M7Q5  
Source: 30445619
Comment: Improves current motif with less trailing positions

Sequence logo

Frequency matrix

         
A [ 593 83 1123 10 16 4 9 39 81 909 348 358 ]
C [ 284 793 4 1099 9 8 3 11 999 36 195 213 ]
G [ 60 124 11 15 1107 1 1123 707 28 117 234 225 ]
T [ 204 141 3 17 9 1128 6 384 33 79 364 345 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0570.1 MA0570 1 ABF1 Arabidopsis thaliana
Basic leucine zipper factors (bZIP)
MA0570.2 MA0570 2 ABF1 Arabidopsis thaliana
Basic leucine zipper factors (bZIP)
     

log(P-value) = -247.615

TFFM details

TFFM ID: TFFM0435.1

ChIP-seq Centrality
log(P-value): -2527.29

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0435.1

ChIP-seq Centrality
log(P-value): -2596.76

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: