Detailed information of matrix profile MA1556.1

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Profile summary
Name: RXRG(var.2)
Matrix ID: MA1556.1
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 14559106
Uniprot ID: P48443  
Source: 28473536
Comment: additional binding mode

Sequence logo

Frequency matrix

         
A [ 803 1264 0 7 12 0 2117 0 64 2117 144 144 23 135 ]
C [ 164 7 107 31 5 2117 15 838 55 214 2117 2117 882 996 ]
G [ 1071 853 2117 2117 33 1 0 0 2117 78 63 176 57 226 ]
T [ 79 0 0 99 2117 16 0 1279 26 119 64 37 1235 761 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1556.1 MA1556 1 RXRG(var.2) Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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