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2020
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Detailed information of matrix profile
MA1691.1
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Matrix > MA1691.1
Profile summary
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Name:
ARF27
Matrix ID:
MA1691.1
Class:
B3 domain
Family:
Collection:
CORE
Taxon:
Plants
Species:
Zea mays
Data Type:
DAP-seq
Validation:
24485461
Uniprot ID:
D9HNV4
Source:
30375394
Comment:
The motif matches the TGTC core motif associated to ARF TFs.
Sequence logo
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Frequency matrix
JASPAR
TRANSFAC
MEME
RAW PFM
Reverse comp.
A [
1524
1928
2684
700
173
5932
163
6497
92
6652
782
1645
1969
]
C [
2266
2049
860
671
6134
635
93
133
6539
76
467
1498
1600
]
G [
1789
1322
1857
4962
279
115
6412
160
89
55
596
2355
1667
]
T [
1251
1531
1429
497
244
148
162
40
110
47
4985
1332
1594
]
Binding sites information
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Version information
ChIP-seq centrality
First order TFFM
Detailed TFFM
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More details
Matrix ID
Base ID
Version
Name
Species
Family
Class
Sequence logo
MA1691.1
MA1691
1
ARF27
Zea mays
B3 domain
JASPAR
TRANSFAC
MEME
RAW PFM
log(P-value) = -6396.08
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Description:
Alias:
Symbol:
Consensus:
Included Models:
GC Content: