Detailed information of matrix profile PB0028.1

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Profile summary
Name: Hbp1_1
Matrix ID: PB0028.1
Class: Other Alpha-Helix
Family: High Mobility Group box (HMG)
Collection: PBM
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 19443739
Uniprot ID: Q8R316  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 35 24 30 41 3 2 97 97 1 1 76 87 11 19 37 22 ]
C [ 18 30 18 14 2 33 0 0 0 2 0 4 11 15 15 26 ]
G [ 16 23 19 10 0 64 1 0 0 93 23 7 4 44 26 24 ]
T [ 32 23 33 34 94 1 2 2 98 4 1 2 73 22 22 28 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PB0028.1 PB0028 1 Hbp1_1 Mus musculus
High Mobility Group box (HMG) Other Alpha-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

Included Models:

GC Content: