JASPAR Collection CNE

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Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0121.1 LM121 AGCTGCAAATTGCATTC Homo sapiens
CN0122.1 LM122 GMAGCTTTTAATGA Homo sapiens
CN0123.1 LM123 WGCTGTCAKTTKTMATK Homo sapiens
CN0124.1 LM124 YTGCCAAATGGAAAW Homo sapiens
CN0125.1 LM125 GCTAATTRCAAATSA Homo sapiens
CN0126.1 LM126 YTGCTCTAATTGCA Homo sapiens
CN0127.1 LM127 TTTTGACAGCTCAG Homo sapiens
CN0128.1 LM128 TGCCAAGTTTCAGCCTGGAG Homo sapiens
CN0129.1 LM129 WGMCAGATGRTMTKKNW Homo sapiens
CN0130.1 LM130 TCTGATTGGCTGKCR Homo sapiens
Showing 10 profiles of page 13 from 24 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.