JASPAR Collection CNE

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Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0141.1 LM141 WGCCAAAMCAAACAGN Homo sapiens
CN0142.1 LM142 WNNWNACAGATCATTAACT Homo sapiens
CN0143.1 LM143 CATTAATCAGMATT Homo sapiens
CN0144.1 LM144 TGCTAATGAGGCCAAGGT Homo sapiens
CN0145.1 LM145 MTWCTCAGATGAAAGRTGCTW Homo sapiens
CN0146.1 LM146 CCTYTGCTGCCCTCTWVTG Homo sapiens
CN0147.1 LM147 MAGAAATCCATTAACW Homo sapiens
CN0148.1 LM148 CAGATTGACATTTC Homo sapiens
CN0149.1 LM149 TTGCTTTCAAATGCCAGGA Homo sapiens
CN0150.1 LM150 CATTAACCTTTAAC Homo sapiens
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.