JASPAR Collection CNE

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Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0151.1 LM151 MCCTGAAGCATGARATTTGATTR Homo sapiens
CN0152.1 LM152 WRRKAARYSAYTTMTCT Homo sapiens
CN0153.1 LM153 NCTGTGATTAAAGCA Homo sapiens
CN0154.1 LM154 CAKCTGGATGAAAAATG Homo sapiens
CN0155.1 LM155 CACTAGGGKACCATTTAGT Homo sapiens
CN0156.1 LM156 SCTTTGTAAACAAG Homo sapiens
CN0157.1 LM157 TGCCTAATTACACA Homo sapiens
CN0158.1 LM158 AWGGAAAWCWGWTTTCCWW Homo sapiens
CN0159.1 LM159 TTGCTTTGGAAGCAGCT Homo sapiens
CN0160.1 LM160 RCTTTCAGAAATSMMWWWW Homo sapiens
Showing 10 profiles of page 16 from 24 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.