JASPAR Collection CNE

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Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0061.1 LM61 TGTCAGCATTTCCATTATRA Homo sapiens
CN0062.1 LM62 AATTGCTTCCAGATG Homo sapiens
CN0063.1 LM63 TGATTTATGAGGTG Homo sapiens
CN0064.1 LM64 TGACAGCTGTTT Homo sapiens
CN0065.1 LM65 KCTCATTTGCATTTCAAARR Homo sapiens
CN0066.1 LM66 GAATGATTAATGACY Homo sapiens
CN0067.1 LM67 WKVAAATGCAATTAAG Homo sapiens
CN0068.1 LM68 WTCATCCAGATGTTTGGY Homo sapiens
CN0069.1 LM69 WGCTAATTRRMTKYYWAWTANM Homo sapiens
CN0070.1 LM70 CTGAACAGATGGCC Homo sapiens
Showing 10 profiles of page 7 from 24 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.