JASPAR Collection CNE

  1. Home
  2. Collection CNE

Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0071.1 LM71 TGATTAATTGCAAA Homo sapiens
CN0072.1 LM72 NATGCYTCATTAAMY Homo sapiens
CN0073.1 LM73 ATGGAAACAGATGGT Homo sapiens
CN0074.1 LM74 AWGCCTTTGAAGTTMW Homo sapiens
CN0075.1 LM75 CAATTTGCAATTCADW Homo sapiens
CN0076.1 LM76 CCAATTTGCATTTCATTTGC Homo sapiens
CN0077.1 LM77 YRGATAATTGAGAGTTGACTR Homo sapiens
CN0078.1 LM78 WTTSCAGGAAATTGCW Homo sapiens
CN0079.1 LM79 TKCWAATGCAAATCAGNY Homo sapiens
CN0080.1 LM80 AGCAATTAACCTTY Homo sapiens
Showing 10 profiles of page 8 from 24 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.