JASPAR Collection CNE

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Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0081.1 LM81 GGTAATTACATTCTGCYT Homo sapiens
CN0082.1 LM82 ACTTGACATTTGCA Homo sapiens
CN0083.1 LM83 CTGTCAAAATCAAT Homo sapiens
CN0084.1 LM84 GACATCTGGTKGCAATTTG Homo sapiens
CN0085.1 LM85 WKSTTTTCATTAAAGM Homo sapiens
CN0086.1 LM86 MAKCTGMYTTTGATY Homo sapiens
CN0087.1 LM87 RNNWWTTGAAGCAATTAGCW Homo sapiens
CN0088.1 LM88 WRGTTAATTGGAATCANW Homo sapiens
CN0089.1 LM89 GTAATTGATTCCAGATG Homo sapiens
CN0090.1 LM90 CTGGCAGCCTGCCAG Homo sapiens
Showing 10 profiles of page 9 from 24 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.