JASPAR Collection PHYLOFACTS

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Total 174 profiles

Display profiles
ID Name JASPAR TRANSFAC Sequence logo
PF0071.1 SYATTGTG - -
PF0072.1 TTCYRGAA - -
PF0073.1 CTTTGA NR1H2-RXR LEF1
PF0074.1 GGAMTNNNNNTCCY - -
PF0075.1 TNCATNTCCYR - STAT1(*)
PF0076.1 CAGGTA - AREB6
PF0077.1 AAAYRNCTG - -
PF0078.1 GCTNWTTGK - -
PF0079.1 WGGAATGY TEAD TEF-1
PF0080.1 SNACANNNYSYAGA - -
Showing 10 profiles of page 8 from 18 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.