JASPAR Collection UNVALIDATED

  1. Home
  2. Collection UNVALIDATED

Total 337 profiles

These profiles are regarded as unvalidated because our curators failed to find any orthogonal support from existing literature. We encourage the community to perform experiments and/or point us to literature that our curators missed in order to support these profiles.
Display profiles
ID Name Species Class Family Sequence logo
UN0132.1 MYNN Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
UN0133.1 PAX8 Homo sapiens Paired box factors Paired domain only
UN0134.1 RHOXF2 Homo sapiens Homeo domain factors Paired-related HD factors
UN0135.1 SKOR1 Homo sapiens
UN0136.1 SKOR2 Homo sapiens
UN0137.1 SOX7 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
UN0138.1 TLX3 Homo sapiens Homeo domain factors NK-related factors
UN0139.1 YBX1 Homo sapiens Cold-shock domain factors Dbp-related factors
UN0143.1 ZBTB20 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
UN0144.1 ZBTB22 Homo sapiens C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
Showing 10 profiles of page 12 from 34 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.