JASPAR Collection PBM_HOMEO

Total 176 profiles

Display profiles
ID Name Species Class Family Sequence logo
PH0001.1 Alx3 Mus musculus Helix-Turn-Helix Homeo
PH0002.1 Alx4 Mus musculus Helix-Turn-Helix Homeo
PH0003.1 Arx Mus musculus Helix-Turn-Helix Homeo
PH0004.1 Nkx3-2 Mus musculus Helix-Turn-Helix Homeo
PH0005.1 Barhl1 Mus musculus Helix-Turn-Helix Homeo
PH0006.1 Barhl2 Mus musculus Helix-Turn-Helix Homeo
PH0007.1 Barx1 Mus musculus Helix-Turn-Helix Homeo
PH0008.1 Barx2 Mus musculus Helix-Turn-Helix Homeo
PH0009.1 Bsx Mus musculus Helix-Turn-Helix Homeo
PH0010.1 Alx1_1 Mus musculus Helix-Turn-Helix Homeo
PH0011.1 Alx1_2 Mus musculus Helix-Turn-Helix Homeo
PH0012.1 Cdx1 Mus musculus Helix-Turn-Helix Homeo
PH0013.1 Cdx2 Mus musculus Helix-Turn-Helix Homeo
PH0014.1 Cphx Mus musculus Helix-Turn-Helix Homeo
PH0015.1 Crx Mus musculus Helix-Turn-Helix Homeo
PH0016.1 Cux1_1 Mus musculus Helix-Turn-Helix Homeo
PH0017.1 Cux1_2 Mus musculus Helix-Turn-Helix Homeo
PH0018.1 Dbx1 Mus musculus Helix-Turn-Helix Homeo
PH0019.1 Dbx2 Mus musculus Helix-Turn-Helix Homeo
PH0020.1 Dlx1 Mus musculus Helix-Turn-Helix Homeo
PH0021.1 Dlx2 Mus musculus Helix-Turn-Helix Homeo
PH0022.1 Dlx3 Mus musculus Helix-Turn-Helix Homeo
PH0023.1 Dlx4 Mus musculus Helix-Turn-Helix Homeo
PH0024.1 Dlx5 Mus musculus Helix-Turn-Helix Homeo
PH0025.1 Dmbx1 Mus musculus Helix-Turn-Helix Homeo
PH0026.1 Duxbl Mus musculus Helix-Turn-Helix Homeo
PH0027.1 Emx2 Mus musculus Helix-Turn-Helix Homeo
PH0028.1 En1 Mus musculus Helix-Turn-Helix Homeo
PH0029.1 En2 Mus musculus Helix-Turn-Helix Homeo
PH0030.1 Esx1 Mus musculus Helix-Turn-Helix Homeo
PH0031.1 Evx1 Mus musculus Helix-Turn-Helix Homeo
PH0032.1 Evx2 Mus musculus Helix-Turn-Helix Homeo
PH0033.1 Gbx1 Mus musculus Helix-Turn-Helix Homeo
PH0034.1 Gbx2 Mus musculus Helix-Turn-Helix Homeo
PH0035.1 Gsc Mus musculus Helix-Turn-Helix Homeo
PH0036.1 Gsx2 Mus musculus Helix-Turn-Helix Homeo
PH0037.1 Hdx Mus musculus Helix-Turn-Helix Homeo
PH0038.1 Hlx Mus musculus Helix-Turn-Helix Homeo
PH0039.1 Mnx1 Mus musculus Helix-Turn-Helix Homeo
PH0040.1 Hmbox1 Mus musculus Helix-Turn-Helix Homeo
PH0041.1 Hmx1 Mus musculus Helix-Turn-Helix Homeo
PH0042.1 Hmx2 Mus musculus Helix-Turn-Helix Homeo
PH0043.1 Hmx3 Mus musculus Helix-Turn-Helix Homeo
PH0044.1 Homez Mus musculus Helix-Turn-Helix Homeo
PH0045.1 Hoxa1 Mus musculus Helix-Turn-Helix Homeo
PH0046.1 Hoxa10 Mus musculus Helix-Turn-Helix Homeo
PH0047.1 Hoxa11 Mus musculus Helix-Turn-Helix Homeo
PH0048.1 Hoxa13 Mus musculus Helix-Turn-Helix Homeo
PH0049.1 Hoxa2 Mus musculus Helix-Turn-Helix Homeo
PH0050.1 Hoxa3 Mus musculus Helix-Turn-Helix Homeo
PH0051.1 Hoxa4 Mus musculus Helix-Turn-Helix Homeo
PH0052.1 Hoxa5 Mus musculus Helix-Turn-Helix Homeo
PH0053.1 Hoxa6 Mus musculus Helix-Turn-Helix Homeo
PH0054.1 Hoxa7_1 Mus musculus Helix-Turn-Helix Homeo
PH0055.1 Hoxa7_2 Mus musculus Helix-Turn-Helix Homeo
PH0056.1 Hoxa9 Mus musculus Helix-Turn-Helix Homeo
PH0057.1 Hoxb13 Mus musculus Helix-Turn-Helix Homeo
PH0058.1 Hoxb3 Mus musculus Helix-Turn-Helix Homeo
PH0059.1 Hoxb4 Mus musculus Helix-Turn-Helix Homeo
PH0060.1 Hoxb5 Mus musculus Helix-Turn-Helix Homeo
PH0061.1 Hoxb6 Mus musculus Helix-Turn-Helix Homeo
PH0062.1 Hoxb7 Mus musculus Helix-Turn-Helix Homeo
PH0063.1 Hoxb8 Mus musculus Helix-Turn-Helix Homeo
PH0064.1 Hoxb9 Mus musculus Helix-Turn-Helix Homeo
PH0065.1 Hoxc10 Mus musculus Helix-Turn-Helix Homeo
PH0066.1 Hoxc11 Mus musculus Helix-Turn-Helix Homeo
PH0067.1 Hoxc12 Mus musculus Helix-Turn-Helix Homeo
PH0068.1 Hoxc13 Mus musculus Helix-Turn-Helix Homeo
PH0069.1 Hoxc4 Mus musculus Helix-Turn-Helix Homeo
PH0070.1 Hoxc5 Mus musculus Helix-Turn-Helix Homeo
PH0071.1 Hoxc6 Mus musculus Helix-Turn-Helix Homeo
PH0072.1 Hoxc8 Mus musculus Helix-Turn-Helix Homeo
PH0073.1 Hoxc9 Mus musculus Helix-Turn-Helix Homeo
PH0074.1 Hoxd1 Mus musculus Helix-Turn-Helix Homeo
PH0075.1 Hoxd10 Mus musculus Helix-Turn-Helix Homeo
PH0076.1 Hoxd11 Mus musculus Helix-Turn-Helix Homeo
PH0077.1 Hoxd12 Mus musculus Helix-Turn-Helix Homeo
PH0078.1 Hoxd13 Mus musculus Helix-Turn-Helix Homeo
PH0079.1 Hoxd3 Mus musculus Helix-Turn-Helix Homeo
PH0080.1 Hoxd8 Mus musculus Helix-Turn-Helix Homeo
PH0081.1 Pdx1 Mus musculus Helix-Turn-Helix Homeo
PH0082.1 Irx2 Mus musculus Helix-Turn-Helix Homeo
PH0083.1 Irx3_1 Mus musculus Helix-Turn-Helix Homeo
PH0084.1 Irx3_2 Mus musculus Helix-Turn-Helix Homeo
PH0085.1 Irx4 Mus musculus Helix-Turn-Helix Homeo
PH0086.1 Irx5 Mus musculus Helix-Turn-Helix Homeo
PH0087.1 Irx6 Mus musculus Helix-Turn-Helix Homeo
PH0088.1 Isl2 Mus musculus Helix-Turn-Helix Homeo
PH0089.1 Isx Mus musculus Helix-Turn-Helix Homeo
PH0090.1 Lbx2 Mus musculus Helix-Turn-Helix Homeo
PH0091.1 Lhx1 Mus musculus Helix-Turn-Helix Homeo
PH0092.1 Lhx2 Mus musculus Helix-Turn-Helix Homeo
PH0093.1 Lhx3 Mus musculus Helix-Turn-Helix Homeo
PH0094.1 Lhx4 Mus musculus Helix-Turn-Helix Homeo
PH0095.1 Lhx5 Mus musculus Helix-Turn-Helix Homeo
PH0096.1 Lhx6_1 Mus musculus Helix-Turn-Helix Homeo
PH0097.1 Lhx6_2 Mus musculus Helix-Turn-Helix Homeo
PH0098.1 Lhx8 Mus musculus Helix-Turn-Helix Homeo
PH0099.1 Lhx9 Mus musculus Helix-Turn-Helix Homeo
PH0100.1 Lmx1a Mus musculus Helix-Turn-Helix Homeo
Showing 100 profiles of page 1 from 2 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.


Create models with permuted columns from selected models.


Download the PFMs of the model(s) selected in four different formats.